Please use this identifier to cite or link to this item: https://dspace.iiti.ac.in/handle/123456789/3832
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dc.contributor.authorKumar, Rameshen_US
dc.contributor.authorNayak, Debasisen_US
dc.contributor.authorSomasekharan, Syam Prakashen_US
dc.date.accessioned2022-03-17T01:00:00Z-
dc.date.accessioned2022-03-17T15:30:46Z-
dc.date.available2022-03-17T01:00:00Z-
dc.date.available2022-03-17T15:30:46Z-
dc.date.issued2021-
dc.identifier.citationKumar, R., Nayak, D., & Somasekharan, S. P. (2021). SILAC-based quantitative MS approach reveals withaferin A regulated proteins in prostate cancer. Journal of Proteomics, 247 doi:10.1016/j.jprot.2021.104334en_US
dc.identifier.issn1874-3919-
dc.identifier.otherEID(2-s2.0-85111520855)-
dc.identifier.urihttps://doi.org/10.1016/j.jprot.2021.104334-
dc.identifier.urihttps://dspace.iiti.ac.in/handle/123456789/3832-
dc.description.abstractWithaferin A (WA) is a steroidal lactone extracted from Withania somnifera, commonly known as Ashwagandha. WA has several therapeutic benefits. The current study aims to identify proteins that are potentially regulated by WA in prostate cancer (PCA) cells. We used a SILAC-based proteomic approach to analyze the expression of proteins in response to WA treatment at 4 h and 24 h time points in three PCA cell lines: 22Rv1, DU-145, and LNCaP. Ontology analysis suggested that prolonged treatment with WA upregulated the expression of proteins involved in stress-response pathways. Treatment with WA increased oxidative stress, reduced global mRNA translation, and elevated the expression of cytoprotective stress granule (SG) protein G3BP1. WA treatment also enhanced the formation of SGs. The elevated expression of G3BP1 and the formation of SGs might constitute a mechanism of cytoprotection in PCA cells. Knockdown of G3BP1 blocked SG formation and enhanced the efficacy of WA to reduce PCA cell survival. Significance: Withaferin A, a steroidal lactone, extracted from Withania somnifera is a promising anti-cancer drug. Using a SILAC-based quantitative proteomic approach, we identified proteins changed by WA-treatment at 4 h and 24 h in three prostate cancer (PCA) cell lines. WA-treatment induced the expression of proteins involved in apoptosis and reduced the expression of proteins involved in cell growth at 4 h. WA-treatment for 24 h enhanced the expression of proteins involved in stress response pathways. WA-treated cells exhibited increased oxidative stress, reduced mRNA translation and enhanced SG formation. PCA is characterized by higher metabolic rate and increased oxidative stress. PCA with a higher stress tolerance can effectively adapt to anti-cancer treatment stress, leading to drug resistance and cellular protection. Enhancing the level of oxidative stress along with inhibition of corresponding cytoprotective stress response pathways is a feasible option to prevent PCA from getting adapted to treatment stress. WA-treatment induced oxidative stress, in combination with blocking SGs by G3BP1 targeting, offers a therapeutic strategy to reduce PCA cell survival. © 2021 Elsevier B.V.en_US
dc.language.isoenen_US
dc.publisherElsevier B.V.en_US
dc.sourceJournal of Proteomicsen_US
dc.subject60S ribosomal protein L10en_US
dc.subjectaars2 proteinen_US
dc.subjectaimp1 proteinen_US
dc.subjectaldh1b1 proteinen_US
dc.subjectascf3 proteinen_US
dc.subjectasparagine linked oligosaccharideen_US
dc.subjectataxin 2en_US
dc.subjectatxn2l proteinen_US
dc.subjectcalm proteinen_US
dc.subjectcaprin1 proteinen_US
dc.subjectcdc5l proteinen_US
dc.subjectcdk1 proteinen_US
dc.subjectchdh proteinen_US
dc.subjectchmp1b proteinen_US
dc.subjectcoa3 proteinen_US
dc.subjectcommd3 proteinen_US
dc.subjectcox7a2 proteinen_US
dc.subjectcpox proteinen_US
dc.subjectcpsf6 proteinen_US
dc.subjectcyb5a proteinen_US
dc.subjectcyb5b proteinen_US
dc.subjectddx1 proteinen_US
dc.subjectddx3x proteinen_US
dc.subjectddx42 proteinen_US
dc.subjectddx47 proteinen_US
dc.subjectddx5 proteinen_US
dc.subjectdnaja1 proteinen_US
dc.subjectdnajb1 proteinen_US
dc.subjectdnajc7 proteinen_US
dc.subjectdrg1 proteinen_US
dc.subjectdstn proteinen_US
dc.subjectdual specificity phosphatase 3en_US
dc.subjectdyskerinen_US
dc.subjecteif2s3 proteinen_US
dc.subjecteif3b proteinen_US
dc.subjecteif4a3 proteinen_US
dc.subjecteif4g1 proteinen_US
dc.subjectELAV like protein 1en_US
dc.subjecteral1 proteinen_US
dc.subjecterlin2 proteinen_US
dc.subjectero1a proteinen_US
dc.subjectfbl proteinen_US
dc.subjectfkbp3 proteinen_US
dc.subjectfxr2 proteinen_US
dc.subjectg3bp1 proteinen_US
dc.subjectgbe1 proteinen_US
dc.subjectgfm2 proteinen_US
dc.subjectgpd2 proteinen_US
dc.subjecthars1 proteinen_US
dc.subjecthnrnpc proteinen_US
dc.subjecthnrnpu proteinen_US
dc.subjecthsp90aa1 proteinen_US
dc.subjecthspa1a proteinen_US
dc.subjecthspa4 proteinen_US
dc.subjecthsph1 proteinen_US
dc.subjectjpt2 proteinen_US
dc.subjectkpna2 proteinen_US
dc.subjectlarp4 proteinen_US
dc.subjectlemd2 proteinen_US
dc.subjectlmna proteinen_US
dc.subjectlmnb1 proteinen_US
dc.subjectlmnb2 proteinen_US
dc.subjectman2b1 proteinen_US
dc.subjectmapk3 proteinen_US
dc.subjectmgat2 proteinen_US
dc.subjectminichromosome maintenance protein 4en_US
dc.subjectminichromosome maintenance protein 5en_US
dc.subjectmogs proteinen_US
dc.subjectmrpl11 proteinen_US
dc.subjectmrpl12 proteinen_US
dc.subjectmrpl15 proteinen_US
dc.subjectmrpl16 proteinen_US
dc.subjectmrpl23 proteinen_US
dc.subjectmrpl41 proteinen_US
dc.subjectmrpl44 proteinen_US
dc.subjectmrps12 proteinen_US
dc.subjectmrps16 proteinen_US
dc.subjectmrps23 proteinen_US
dc.subjectmtap proteinen_US
dc.subjectmthfd1 proteinen_US
dc.subjectmybbp1a proteinen_US
dc.subjectnbas proteinen_US
dc.subjectndufab1 proteinen_US
dc.subjectndufaf1 proteinen_US
dc.subjectnt5c2 proteinen_US
dc.subjectnucleoporin 98en_US
dc.subjectnudt21 proteinen_US
dc.subjectnup153 proteinen_US
dc.subjectnup37 proteinen_US
dc.subjectnup54 proteinen_US
dc.subjectp21 activated kinase 2en_US
dc.subjectpabn1 proteinen_US
dc.subjectpabpn1 proteinen_US
dc.subjectpaf1 proteinen_US
dc.subjectpcyox1l proteinen_US
dc.subjectpdcd4 proteinen_US
dc.subjectpde12 proteinen_US
dc.subjectpdha1 proteinen_US
dc.subjectpgls proteinen_US
dc.subjectpicalm proteinen_US
dc.subjectpitpnb proteinen_US
dc.subjectpold1 proteinen_US
dc.subjectppp2r5e proteinen_US
dc.subjectprim2 proteinen_US
dc.subjectprmt5 proteinen_US
dc.subjectproteinen_US
dc.subjectprpf19 proteinen_US
dc.subjectprpsap1 proteinen_US
dc.subjectpsma4 proteinen_US
dc.subjectpsmd10 proteinen_US
dc.subjectptcd3 proteinen_US
dc.subjectptges3 proteinen_US
dc.subjectrad23a proteinen_US
dc.subjectrad23b proteinen_US
dc.subjectreactive oxygen metaboliteen_US
dc.subjectRNA binding protein FUSen_US
dc.subjectrnf40 proteinen_US
dc.subjectrpl12 proteinen_US
dc.subjectrpl13a proteinen_US
dc.subjectrpl14 proteinen_US
dc.subjectrpl21 proteinen_US
dc.subjectrpl26 proteinen_US
dc.subjectrpl31 proteinen_US
dc.subjectrpl35 proteinen_US
dc.subjectrpl35a proteinen_US
dc.subjectrpl36al proteinen_US
dc.subjectrpl6 proteinen_US
dc.subjectrpl7a proteinen_US
dc.subjectrps13 proteinen_US
dc.subjectrps15a proteinen_US
dc.subjectrps16 proteinen_US
dc.subjectrps19 proteinen_US
dc.subjectrps24 proteinen_US
dc.subjectrps25 proteinen_US
dc.subjectrps29 proteinen_US
dc.subjectrps3a proteinen_US
dc.subjectrps4x proteinen_US
dc.subjectrps6 proteinen_US
dc.subjectrps7 proteinen_US
dc.subjectscamp4 proteinen_US
dc.subjectsf3a2 proteinen_US
dc.subjectsf3b6 proteinen_US
dc.subjectsfpq proteinen_US
dc.subjectsgta proteinen_US
dc.subjectsmc2 proteinen_US
dc.subjectsnrpa1 proteinen_US
dc.subjectsnrpd1 proteinen_US
dc.subjectsrrm2 proteinen_US
dc.subjectsrsf6 proteinen_US
dc.subjectsrsf7 proteinen_US
dc.subjectstromal interaction molecule 1en_US
dc.subjecttardbp proteinen_US
dc.subjecttcof1 proteinen_US
dc.subjecttomm34 proteinen_US
dc.subjecttxn proteinen_US
dc.subjectube2l3 proteinen_US
dc.subjectufc1 proteinen_US
dc.subjectunclassified drugen_US
dc.subjectvbp1 proteinen_US
dc.subjectvps4b proteinen_US
dc.subjectwithaferin Aen_US
dc.subjectY box binding protein 1en_US
dc.subjectythdf2 proteinen_US
dc.subjectDNA helicaseen_US
dc.subjectG3BP1 protein, humanen_US
dc.subjectpoly ADP ribose binding proteinen_US
dc.subjectRNA helicaseen_US
dc.subjectRNA recognition motif proteinen_US
dc.subjectwithaferin Aen_US
dc.subjectwithanolideen_US
dc.subject22Rv1 cell lineen_US
dc.subjectamino acid metabolismen_US
dc.subjectapoptosisen_US
dc.subjectArticleen_US
dc.subjectcarbohydrate metabolismen_US
dc.subjectcastration-resistant prostate cancer cell lineen_US
dc.subjectcell cultureen_US
dc.subjectcell cycleen_US
dc.subjectcell damageen_US
dc.subjectcell growthen_US
dc.subjectcell lysateen_US
dc.subjectcell proliferationen_US
dc.subjectcell protectionen_US
dc.subjectcell survivalen_US
dc.subjectchromatin assembly and disassemblyen_US
dc.subjectcitric acid cycleen_US
dc.subjectcontrolled studyen_US
dc.subjectDNA repairen_US
dc.subjectdown regulationen_US
dc.subjectDU145 cell lineen_US
dc.subjectendocytosisen_US
dc.subjectendoplasmic reticulum stressen_US
dc.subjectfatty acid synthesisen_US
dc.subjectgene expressionen_US
dc.subjectgene knockdownen_US
dc.subjectgluconeogenesisen_US
dc.subjectGolgi complexen_US
dc.subjectheat shock responseen_US
dc.subjectheat toleranceen_US
dc.subjectimmunofluorescence microscopyen_US
dc.subjectisotope labelingen_US
dc.subjectlipid metabolismen_US
dc.subjectliquid chromatography-mass spectrometryen_US
dc.subjectLNCaP cell lineen_US
dc.subjectmass spectrometryen_US
dc.subjectmetabolic rateen_US
dc.subjectmitochondrial geneen_US
dc.subjectnucleocytoplasmic transporten_US
dc.subjectnucleotide excision repairen_US
dc.subjectnucleotide metabolismen_US
dc.subjectontologyen_US
dc.subjectoxidative stressen_US
dc.subjectphysiological stressen_US
dc.subjectprostate canceren_US
dc.subjectprotein analysisen_US
dc.subjectprotein expressionen_US
dc.subjectprotein fingerprintingen_US
dc.subjectprotein foldingen_US
dc.subjectprotein synthesisen_US
dc.subjectproteomicsen_US
dc.subjectribosomeen_US
dc.subjectRNA metabolismen_US
dc.subjectRNA splicingen_US
dc.subjectRNA translationen_US
dc.subjectSILAC labelingen_US
dc.subjecttranslation elongationen_US
dc.subjecttranslation initiationen_US
dc.subjectubiquitinationen_US
dc.subjectupregulationen_US
dc.subjectWestern blottingen_US
dc.subjecthumanen_US
dc.subjectmaleen_US
dc.subjectprostate tumoren_US
dc.subjectproteomicsen_US
dc.subjectDNA Helicasesen_US
dc.subjectHumansen_US
dc.subjectMaleen_US
dc.subjectPoly-ADP-Ribose Binding Proteinsen_US
dc.subjectProstatic Neoplasmsen_US
dc.subjectProteomicsen_US
dc.subjectRNA Helicasesen_US
dc.subjectRNA Recognition Motif Proteinsen_US
dc.subjectWithanolidesen_US
dc.titleSILAC-based quantitative MS approach reveals Withaferin A regulated proteins in prostate canceren_US
dc.typeJournal Articleen_US
Appears in Collections:Department of Biosciences and Biomedical Engineering

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