Please use this identifier to cite or link to this item: https://dspace.iiti.ac.in/handle/123456789/3930
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dc.contributor.authorSonkar, Charuen_US
dc.contributor.authorVerma, Tarun Prakashen_US
dc.contributor.authorJha, Hem Chandraen_US
dc.date.accessioned2022-03-17T01:00:00Z-
dc.date.accessioned2022-03-17T15:31:03Z-
dc.date.available2022-03-17T01:00:00Z-
dc.date.available2022-03-17T15:31:03Z-
dc.date.issued2020-
dc.identifier.citationSonkar, C., Verma, T., Chatterji, D., Jain, A. K., & Jha, H. C. (2020). Status of kinases in epstein-barr virus and helicobacter pylori coinfection in gastric cancer cells. BMC Cancer, 20(1) doi:10.1186/s12885-020-07377-0en_US
dc.identifier.issn1471-2407-
dc.identifier.otherEID(2-s2.0-85092288061)-
dc.identifier.urihttps://doi.org/10.1186/s12885-020-07377-0-
dc.identifier.urihttps://dspace.iiti.ac.in/handle/123456789/3930-
dc.description.abstractBackground: Helicobacter pylori (H. pylori) and Epstein-Barr virus (EBV) plays a significant role in aggressive gastric cancer (GC). The investigation of genes associated with these pathogens and host kinases may be essential to understand the early and dynamic progression of GC. Aim: The study aimed to demonstrate the coinfection of EBV and H. pylori in the AGS cells through morphological changes, expression of the kinase and the probable apoptotic pathways. Methods: Genomic DNA isolation of H. pylori and its characterization from clinical samples were performed. RT-qPCR of kinases was applied to scrutinize the gene expression of kinases in co-infected GC in a direct and indirect (separated through insert size 0.45 μm) H. pylori infection set up. Morphological changes in co-infected GC were quantified by measuring the tapering ends of gastric epithelial cells. Gene expression profiling of apoptotic genes was assessed through RT-qPCR. Results: An interleukin-2-inducible T-cell kinase (ITK) showed significant upregulation with indirect H. pylori infection. Moreover, Ephrin type-B receptor six precursors (EPHB6) and Tyrosine-protein kinase Fyn (FYN) showed significant upregulation with direct coinfection. The tapering ends in AGS cells were found to be extended after 12 h. A total of 24 kinase genes were selected, out of which EPHB6, ITK, FYN, and TYK2 showed high expression as early as 12 h. These kinases may lead to rapid morphological changes in co-infected gastric cells. Likewise, apoptotic gene expression such as APAF-1 and Bcl2 family genes such as BAD, BID, BIK, BIM, BAX, AND BAK were significantly down-regulated in co-infected AGS cells. Conclusion: All the experiments were performed with novel isolates of H. pylori isolated from central India, for the functional assessment of GC. The effect of coinfection with EBV was more profoundly observed on morphological changes in AGS cells at 12 h as quantified by measuring the tapering of ends. This study also identifies the kinase and apoptotic genes modulated in co-infected cells, through direct and indirect approaches. We report that ITK, EPHB6, TYK2, FYN kinase are enhanced, whereas apoptotic genes such as APAF-1, BIK, FASL, BAX are significantly down-regulated in AGS cells coinfected with EBV and H. pylori. © 2020 The Author(s).en_US
dc.language.isoenen_US
dc.publisherBioMed Central Ltden_US
dc.sourceBMC Canceren_US
dc.subjectephrin receptor B6en_US
dc.subjectgenomic DNAen_US
dc.subjectinterleukin 2 inducible T cell kinaseen_US
dc.subjectphosphotransferaseen_US
dc.subjectprotein kinase Fynen_US
dc.subjectunclassified drugen_US
dc.subjectphosphotransferaseen_US
dc.subjectanimal cellen_US
dc.subjectAPAF 1 geneen_US
dc.subjectapoptosisen_US
dc.subjectArticleen_US
dc.subjectbacterium adherenceen_US
dc.subjectbacterium isolationen_US
dc.subjectBAX geneen_US
dc.subjectBIK geneen_US
dc.subjectcancer growthen_US
dc.subjectcell proliferationen_US
dc.subjectcell structureen_US
dc.subjectcontrolled studyen_US
dc.subjectDNA isolationen_US
dc.subjectdown regulationen_US
dc.subjectembryoen_US
dc.subjectenzyme activityen_US
dc.subjectEPHB6 geneen_US
dc.subjectepithelium cellen_US
dc.subjectEpstein Barr virusen_US
dc.subjectFASL geneen_US
dc.subjectfunctional assessmenten_US
dc.subjectFYN geneen_US
dc.subjectgastric cancer cell lineen_US
dc.subjectgeneen_US
dc.subjectgene expression profilingen_US
dc.subjectgene expression regulationen_US
dc.subjectgene functionen_US
dc.subjectHelicobacter infectionen_US
dc.subjectHelicobacter pylorien_US
dc.subjecthumanen_US
dc.subjecthuman cellen_US
dc.subjecthuman tissueen_US
dc.subjectIndiaen_US
dc.subjectITK geneen_US
dc.subjectmixed infectionen_US
dc.subjectnonhumanen_US
dc.subjectproto oncogeneen_US
dc.subjectreal time polymerase chain reactionen_US
dc.subjectstomach adenocarcinomaen_US
dc.subjectstomach epitheliumen_US
dc.subjectTYK2 geneen_US
dc.subjectupregulationen_US
dc.subjectclassificationen_US
dc.subjectcomplicationen_US
dc.subjectEpstein Barr virusen_US
dc.subjectEpstein Barr virus infectionen_US
dc.subjectgeneticsen_US
dc.subjectHelicobacter pylorien_US
dc.subjectmicrobiologyen_US
dc.subjectmixed infectionen_US
dc.subjectpathogenicityen_US
dc.subjectpathologyen_US
dc.subjectproceduresen_US
dc.subjectstomach mucosaen_US
dc.subjectstomach tumoren_US
dc.subjecttumor cell lineen_US
dc.subjectvirologyen_US
dc.subjectCell Line, Tumoren_US
dc.subjectCell Proliferationen_US
dc.subjectCoinfectionen_US
dc.subjectEpstein-Barr Virus Infectionsen_US
dc.subjectGastric Mucosaen_US
dc.subjectGene Expression Profilingen_US
dc.subjectGene Expression Regulation, Neoplasticen_US
dc.subjectHelicobacter Infectionsen_US
dc.subjectHelicobacter pylorien_US
dc.subjectHerpesvirus 4, Humanen_US
dc.subjectHumansen_US
dc.subjectPhosphotransferasesen_US
dc.subjectStomach Neoplasmsen_US
dc.titleStatus of kinases in Epstein-Barr virus and Helicobacter pylori Coinfection in gastric Cancer cellsen_US
dc.typeJournal Articleen_US
dc.rights.licenseAll Open Access, Gold, Green-
Appears in Collections:Department of Biosciences and Biomedical Engineering

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